Changes between Version 34 and Version 35 of WikiStart

Timestamp:

Oct 2, 2009, 3:32:52 PM (15 years ago)

Author:

sallet

Comment:

--

WikiStart

@@ -1 @@
-= LeARN: a platform for annotating, clustering and editing ncRNA =
+[09/10/01] NEWS: LeARN version 1.5 is available. This version includes a lot of functionalities for studying smallRNA data
 
-    * See the [http://symbiose.toulouse.inra.fr/LeARN/Download/doc/AdminGuide-1.2.0.pdf AdminGuide] to install and manage LeARN databases
+= LeARN/smallA: a platform for annotating, clustering and editing ncRNA =
+  
+    * LeARN is a platform for annotating, clustering and editing ncRNA
 
-    * The QuickStart page describes how to install the LeARN demo server at home
+    * smallA is a platform based on LeARN, dedicated to analyse data generated by projects aiming at studying smallRNA on the basis of deep
+sequencing.
+
+    * See the [http://symbiose.toulouse.inra.fr/LeARN/Download/doc/AdminGuide-1.5.pdf AdminGuide] to install and manage LeARN/smallA release
+
+    * The QuickStart sections describe how to install the LeARN/smallA demo server at home
 
 == LeARN demo server ==
@@ -13 +20 @@
 == Download ==
 
-The forthcoming release schedule is published under the roadmap tab above. 
+Download the latest release available at  http://symbiose.toulouse.inra.fr/LeARN/Download/LeARN-1.5.0.tar.gz
 
-Download the latest release (1.2.0) at http://symbiose.toulouse.inra.fr/LeARN/Download/LeARN-1.2.0.tar.gz
+The release 1.2.0 still available at http://symbiose.toulouse.inra.fr/LeARN/Download/LeARN-1.2.0.tar.gz
 
 The release 1.0.1 still available at http://symbiose.toulouse.inra.fr/LeARN/Download/LeARN-1.0.1.tar.gz
@@ -24 +31 @@
 
 
-The release 1.5.0 including smalla is delayed to the end of August.
+The latest release is 1.5.0.
 
-The latest release is 1.2.0
+1.5.0 October 2009 - include a complete pipeline to manage smallRNA and microRNA libraries.
 
 1.2.0 July 2008 - include several software to manage small/micro RNA annotation
@@ -43 +50 @@
 
  * EU Grain Legumes Integrated Project
- * Institut des Sciences du Végétal
- * Genopole Toulouse Midi Pyrénées
+ * [http://www.isv.cnrs-gif.fr/ Institut des Sciences du Végétal]
+ * [http://www.genotoul.fr/ Genopole Toulouse Midi Pyrénées]
+ * [http://www.inra.fr/mia/ BIA (Biométrie et Intelligence articifielle) - INRA]
 
 == Reference ==
 
  * [http://www.ncbi.nlm.nih.gov/pubmed/18194551?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum Noirot C, Gaspin C, Schiex T, Gouzy J. LeARN: a platform for detecting, clustering and annotating non-coding RNAs.BMC Bioinformatics. 2008 Jan 14;9:21.]
- * Genome-wide Medicago truncatula small RNA analysis revealed novel miRNAs and isoforms differentially regulated in roots and nodules
-   Christine Lelandais-Brière, Loreto Naya, Erika Sallet, Fanny Calenge, Florian Frugier, Caroline Hartmann, Jérome Gouzy and Martin Crespi
-   Plant Cell (in press)
+ * [http://www.plantcell.org/cgi/content/short/tpc.109.068130?keytype=ref&ijkey=Rhzuzu8ZWUwZAcs Genome-wide Medicago truncatula small RNA analysis revealed novel miRNAs and isoforms differentially regulated in roots and nodules Christine Lelandais-Brière, Loreto Naya, Erika Sallet, Fanny Calenge, Florian Frugier, Caroline Hartmann, Jérome Gouzy and Martin Crespi]
 
 
@@ -61 +67 @@
  * [http://www.tbi.univie.ac.at/~ivo/RNA/ Vienna Package]
  * [http://www.bioinfo.rpi.edu/~zukerm/export/ Mfold]
+ * [http://www.mirbase.org/ miRBase]
  * [http://wwwabi.snv.jussieu.fr/research/publi/small_ncRNA  mirfold]
+ * [http://cbio.mskcc.org/research/sander/data/miRNA2003/miranda_new.html miRanda]
+ * [http://mkweb.bcgsc.ca/circos/ Circos]
+
 
  * [http://supfam.mrc-lmb.cam.ac.uk/treedraw/tree.html JgoughPhylo.pm]