[October, 2009] NEWS: LeARN version 1.5 including smallA is available
LeARN/smallA: a platform for annotating, clustering and editing ncRNA
- LeARN is a platform for annotating, clustering and editing ncRNA
- smallA is a platform based on LeARN, dedicated to analyse data generated by RNAseq smallRNA projects.
- See the AdminGuide to install and manage LeARN/smallA
- The QuickStart section describes how to install the LeARN demo server at home (for smallA, see the Admin Guide)
LeARN demo server
We have set up a LeARN demo server for those of you who want to try out LeARN. Without login you can access to browse and search features but to be able to edit the database in a private workspace you must ask for a login and a password at learn@…. Referee of the manuscript can use one of the following pair of LoginPassword
In order to illustrate the annotation capabilities of LeARN, access the annotation of CB/box and H/ACA families.
Download
Download the latest release available at http://symbiose.toulouse.inra.fr/LeARN/Download/LeARN-1.5.0.tar.gz
The release 1.2.0 still available at http://symbiose.toulouse.inra.fr/LeARN/Download/LeARN-1.2.0.tar.gz
The release 1.0.1 still available at http://symbiose.toulouse.inra.fr/LeARN/Download/LeARN-1.0.1.tar.gz
The source code for the Biomoby web services accessing LeARN repositories is available here
Release
The latest release is 1.5.0.
1.5.0 October 2009 - include a complete pipeline to manage smallRNA and microRNA libraries.
1.2.0 July 2008 - include several software to manage small/micro RNA annotation
1.0.1 June 2006 - first release
Feedback
You have to login to this trac environment to be able report bugs, enhancement ideas, and feature requests. Login with learn and password learn and use the ticket reporting system.
License
LeARN is an open source project and available for free under the CECILL2 license
Sponsors
- EU Grain Legumes Integrated Project
- Institut des Sciences du Végétal
- Genopole Toulouse Midi Pyrénées
- BIA (Biométrie et Intelligence articifielle) - INRA
Reference
- Noirot C, Gaspin C, Schiex T, Gouzy J. LeARN: a platform for detecting, clustering and annotating non-coding RNAs.BMC Bioinformatics. 2008 Jan 14;9:21.
- Genome-wide Medicago truncatula small RNA analysis revealed novel miRNAs and isoforms differentially regulated in roots and nodules C. Lelandais-Brière, Loreto Naya, Erika Sallet, Fanny Calenge, Florian Frugier, Caroline Hartmann, Jérome Gouzy and Martin Crespi Plant Cell. 2009